Web10 okt. 2024 · WGCNA question - REAL () can only be applied to a 'numeric', not a 'integer'. 01-14-2016, 04:41 AM. Hi, I'm tried to use the WGCNA bioconductor package on my RNAseq data - it was originally integer FPKM counts from the tuxedo pipeline, so I log2 (x+1) transformed it (as was reccomended on the WGCNA bioconductor page), because … Web10 apr. 2024 · Hi, I am trying to generate my modules using blockwiseModules, with the following code: net <- blockwiseModules(data_TRAP, power = 8, TOMType = "unsigned", minModuleSize = 30, reassignThreshold = 0, mergeCutHeight = 0.25, numericLabels = TRUE, pamRespectsDendro = FALSE, saveTOMs = TRUE, saveTOMFileBase = …
GmicR source: R/Auto_WGCNA.R - rdrr.io
Web1. Preliminaries and data input ¶. # Code chunk 1 # Display the current working directory getwd(); # If necessary, change the path below to the directory where the data files are stored. # "." means current directory. workingDir = "."; setwd( workingDir ); # Load the … WebContribute to donalbonny/co-expression-analysis-WGCNA development by creating an account on GitHub. how does a transform boundary move
WGCNA(2):选择软阈值+网络构建 码农家园
Web15 jun. 2024 · net= blockwiseModules(Th1_h5, power=6, TOMType = "signed", minModuleSize=30, reassignThreshold =0, mergeCutHeight = 0.25, numericLabels = TRUE, pamRespectsDendro = FALSE, saveTOMs = TRUE, saveTOMFileBase = … Webp<0.05 is always good, even better is to use a reasonable multiple testing correction for the p-value. In terms of correlation, it depends - a high correlation is always preferable to a low one, but there's no generally accepted threshold like the 0.05 for p-values. ADD REPLY • … WebBackground: Pre-eclampsia is a serious disorder associated with pregnancy, but its etiology remains poorly understood. In this study, we aimed to explore the shared genes and molecular pathways between pre-eclampsia and type 2 diabetes mellitus (T2DM). Methods: The record of 2160 pregnant women who had pre-eclampsia risk assessed by placental … how does a transmission solenoid work